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--- institute_lorentz:irods_fair_storage [2022/10/20 07:50] – [iCommands Setup] lenocil
+++ institute_lorentz:irods_fair_storage [2023/06/13 07:36] (current) – lenocil
@@ Line 1: / Line 1: @@
 ====== FAIR Storage Service ======
-|:!: DRAFT: Doc in preparation |
-|Comments, suggestions and corrections are really appreciated |
 Lorentz Institute offers its members a data storage option that complies with the //**FAIR** Guiding Principles for scientific data management and stewardship.//((https://www.go-fair.org/fair-principles/)) The goal is to offer a standard platform that enables, facilitates, and promotes the implementation of robust data-management plans complying with the most stringent professional requirements (scientific publications, research grants applications, etc..).
@@ Line 18: / Line 15: @@
 ===== FAIR Storage Access =====
-Access to this server must be requested by sending an email to <support@lorentz.leidenuniv.nl>.
+Writing access to this server must be requested by sending an email to <support@lorentz.leidenuniv.nl>.
 Once access has been granted, you can interact with the server via any of the [[https://irods.org/clients/|supported iRODS clients]]. For the sake of simplicity, we have set up all the IL GNU/Linux workstations and the xmaris cluster with the following iRODS clients so that you can start using our storage system immediately
@@ Line 24: / Line 21: @@
   * [[https://github.com/irods/irods_client_icommands|iCommands]]
   * [[https://github.com/UtrechtUniversity/davrods|DavRODS]]
+Additionally our [[https://remote.lorentz.leidenuniv.nl|remote desktop system]] is also able to access our iRODS server directly from its OpenOnDemand files app using [[https://rclone.org/]] as described [[institute_lorentz:irods_fair_storage#rclone_access|here]].
 iCommands is the most flexible and powerful client, but it might require a basic prior knowledge of the GNU/Linux command line.
@@ Line 237: / Line 236: @@
 </code>
-If your collaborator has no access to icommands, then place the object you would like to share in the folder ''/ilZone/home/anonymous'' and //ichmod// to give the user anonymous reading access to your object which will be shared using the web browser at https://access.lorentz.leidenuniv.nl/anon .
+If your collaborator has no access to icommands, then place the object you would like to share in the folder ''/ilZone/home/anonymous'' and //ichmod// to give the user anonymous reading access to your object which will be shared using the web browser at https://access.lorentz.leidenuniv.nl/anon/anonymous .
 __Web Browsers: webdav__
-Without creating a ticket for a data object, you could login to our //FAIR// storage system place any object you would like to share in a special collection called ''/ilZone/home/anonymous''. Any external collaborator can then access it (READ ONLY) by browsing to https://access.lorentz.leidenuniv.nl/anon in a similar fashion to the example [[#webdav_access|here]].
+Without creating a ticket for a data object, you could login to our //FAIR// storage system place any object you would like to share in a special collection called ''/ilZone/home/anonymous''. Any external collaborator can then access it (READ ONLY) by browsing to https://access.lorentz.leidenuniv.nl/anon/anonymous in a similar fashion to the example [[#webdav_access|here]].
+Access via the ticket system using a web browser will follow the scheme
+<code>
+https://access.lorentz.leidenuniv.nl/anon/<YOUR_HOME_PATH_TO_DATA_TO_BE_SHARED>?ticket=<TICKET_ID>
+# example
+https://access.lorentz.leidenuniv.nl/anon/home/bongo/my/Data4You?ticket=hT6Yji111
+</code>
@@ Line 293: / Line 298: @@
 === Web Browser Access ===
-|URL | https://access.lorentz.leidenuniv.nl|
+|URL | https://access.lorentz.leidenuniv.nl/davrods|
 |Username| IL Username|
 |Password| IL Password|
@@ Line 301: / Line 306: @@
 Anonymous access
-|URL | https://access.lorentz.leidenuniv.nl/anon|
+|URL | https://access.lorentz.leidenuniv.nl/anon/anonymous|
@@ Line 315: / Line 320: @@
 Menu -> Places -> Connect to Server((This may vary depending on the OS. If in trouble search for Connect To Server.))
-|Server| access.lorentz.leidenuniv.nl|
+|Server| access.lorentz.leidenuniv.nl/davrods|
 |Port | 443|
 |Type|Secure WebDAV (HTTPS)|
@@ Line 325: / Line 330: @@
 Finder -> Go -> Connect to Server
-|Server Address| https://access.lorentz.leidenuniv.nl|
+|Server Address| https://access.lorentz.leidenuniv.nl/davrods|
 Specify your IL credentials when prompted and click on Connect.
+==== Rclone Access ====
+:!: This access method works only on our remote desktop system
+Open a terminal
+<code bash>
+$ rclone config
+No remotes found - make a new one
+n) New remote
+s) Set configuration password
+q) Quit config
+n/s/q> n
+name> iRODS
+Type of storage to configure.
+Enter a string value. Press Enter for the default ("").
+Choose a number from below, or type in your own value
+/ 1Fichier
+   \ "fichier"
+/ Alias for an existing remote
+   \ "alias"
+/ Amazon Drive
+   \ "amazon cloud drive"
+/ Amazon S3 Compliant Storage Providers including AWS, Alibaba, Ceph, Digital Ocean, Dreamhost, IBM COS, Minio, and Tencent COS
+   \ "s3"
+...
+/ Union merges the contents of several upstream fs
+   \ "union"
+/ Webdav
+   \ "webdav"
+/ Yandex Disk
+   \ "yandex"
+/ Zoho
+   \ "zoho"
+/ http Connection
+   \ "http"
+/ premiumize.me
+   \ "premiumizeme"
+/ seafile
+   \ "seafile"
+Storage> 37
+** See help for webdav backend at: https://rclone.org/webdav/ **
+URL of http host to connect to
+Enter a string value. Press Enter for the default ("").
+Choose a number from below, or type in your own value
+/ Connect to example.com
+   \ "https://example.com"
+url> https://access.lorentz.leidenuniv.nl/davrods
+Name of the Webdav site/service/software you are using
+Enter a string value. Press Enter for the default ("").
+Choose a number from below, or type in your own value
+/ Nextcloud
+   \ "nextcloud"
+/ Owncloud
+   \ "owncloud"
+/ Sharepoint Online, authenticated by Microsoft account.
+   \ "sharepoint"
+/ Sharepoint with NTLM authentication. Usually self-hosted or on-premises.
+   \ "sharepoint-ntlm"
+/ Other site/service or software
+   \ "other"
+vendor> iRODS
+User name. In case NTLM authentication is used, the username should be in the format 'Domain\User'.
+Enter a string value. Press Enter for the default ("").
+user> YOUR_IL_USERNAME
+Password.
+y) Yes type in my own password
+g) Generate random password
+n) No leave this optional password blank (default)
+y/g/n> y
+Enter the password:
+password:
+Confirm the password:
+password:
+Bearer token instead of user/pass (e.g. a Macaroon)
+Enter a string value. Press Enter for the default ("").
+bearer_token>
+Edit advanced config? (y/n)
+y) Yes
+n) No (default)
+y/n> n
+Remote config
+--------------------
+[iRODS]
+type = webdav
+url = https://access.lorentz.leidenuniv.nl/davrods
+vendor = iRODS
+user = YOUR_IL_USERNAME
+pass = *** ENCRYPTED ***
+--------------------
+y) Yes this is OK (default)
+e) Edit this remote
+d) Delete this remote
+y/e/d> y
+Current remotes:
+Name                 Type
+====                 ====
+iRODS                webdav
+e) Edit existing remote
+n) New remote
+d) Delete remote
+r) Rename remote
+c) Copy remote
+s) Set configuration password
+q) Quit config
+e/n/d/r/c/s/q> q
+$
+</code>
+The navigate to https://remote.lorentz.leidenuniv.nl/pun/sys/dashboard/files/iRODS to interact with our iRODS storage via a web browser.

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